Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Pbrm1

Cell type

Cell type Class
Others
Cell type
Tumor
NA
NA

Attributes by original data submitter

Sample

source_name
mouse tumor
genotype
SS18-SSX+
chip antibody
Baf180
strain
C57BL/6

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nuclei was isolated from snap frozen samples. Lysates were clarified from sonicated nuclei and BAF-DNA complexes were isolated with antibody. Library was prepared using NEBnext ChIP-seq libraray prep reagent set

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

mm10

Number of total reads
29401484
Reads aligned (%)
96.3
Duplicates removed (%)
44.4
Number of peaks
9242 (qval < 1E-05)

mm9

Number of total reads
29401484
Reads aligned (%)
96.2
Duplicates removed (%)
44.3
Number of peaks
9175 (qval < 1E-05)

Base call quality data from DBCLS SRA