Antigen

Antigen Class

TFs and others

Antigen

Pbrm1

Cell type

Cell type Class

Others

Cell type

Tumor

NA

NA

Sample

source_name

mouse tumor

genotype

SS18-SSX+

chip antibody

Baf180

strain

C57BL/6

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Nuclei was isolated from snap frozen samples. Lysates were clarified from sonicated nuclei and BAF-DNA complexes were isolated with antibody. Library was prepared using NEBnext ChIP-seq libraray prep reagent set

Sequencing Platform

instrument_model

Illumina NovaSeq 6000

mm10

Number of total reads

29401484

Reads aligned (%)

96.3

Duplicates removed (%)

44.4

Number of peaks

9242 (qval < 1E-05)

mm9

Number of total reads

29401484

Reads aligned (%)

96.2

Duplicates removed (%)

44.3

Number of peaks

9175 (qval < 1E-05)